- Pipeline Olympics: continuable benchmarking of computational workflows for DNA methylation sequencing data against an experimental gold standard
Lin, Yu-Yu; Breuer, Kersten; Weichenhan, Dieter et al.
Nucleic Acids Research. Bd. 53. H. 19. Oxford University Press (OUP) 2025
- Indirect epigenetic testing identifies a diagnostic signature of cardiomyocyte DNA methylation in heart failure
Oeing, Christian U.; Pepin, Mark E.; Saul, Kerstin B. et al.
Basic Research in Cardiology. Bd. 118. H. 1. Springer Science and Business Media LLC 2023
- Identification of NHLRC1 as a Novel AKT Activator from a Lung Cancer Epigenome-Wide Association Study (EWAS)
Faltus, Christian; Lahnsteiner, Angelika; Barrdahl, Myrto et al.
International Journal of Molecular Sciences. Bd. 23. H. 18. MDPI AG 2022 S. 10699
- Pediatric T-ALL type-1 and type-2 relapses develop along distinct pathways of clonal evolution
Richter-Pechańska, Paulina; Kunz, Joachim B.; Rausch, Tobias et al.
Leukemia. Bd. 36. H. 7. Springer Science and Business Media LLC 2022 S. 1759 - 1768
- Immunotyping of clinically divergent p.Phe508del homozygous monozygous cystic fibrosis twins
Schamschula, Esther; Hagmann, Wolfgang; Assenov, Yassen et al.
Journal of Cystic Fibrosis. Bd. 20. H. 1. Elsevier BV 2021 S. 149 - 153
- Integrative analysis reveals early and distinct genetic and epigenetic changes in intraductal papillary and tubulopapillary cholangiocarcinogenesis
Goeppert, Benjamin; Stichel, Damian; Toth, Reka et al.
Gut. Bd. 71. H. 2. BMJ 2021 S. 391 - 401
- Methylome-based cell-of-origin modeling (Methyl-COOM) identifies aberrant expression of immune regulatory molecules in CLL
Wierzbinska, Justyna A.; Toth, Reka; Ishaque, Naveed et al.
Genome Medicine. Bd. 12. H. 1. Springer Science and Business Media LLC 2020
- Histone methyltransferase SETDB1 contributes to melanoma tumorigenesis and serves as a new potential therapeutic target
Orouji, Elias; Federico, Aniello; Larribère, Lionel et al.
International Journal of Cancer. Bd. 145. H. 12. Wiley 2019 S. 3462 - 3477
- Integrative Analysis Defines Distinct Prognostic Subgroups of Intrahepatic Cholangiocarcinoma
Goeppert, Benjamin; Toth, Reka; Singer, Stephan et al.
Hepatology. Bd. 69. H. 5. Ovid Technologies (Wolters Kluwer Health) 2019 S. 2091 - 2106
- Random forest-based modelling to detect biomarkers for prostate cancer progression
Toth, Reka; Schiffmann, Heiko; Hube-Magg, Claudia et al.
Clinical Epigenetics. Bd. 11. H. 1. Springer Science and Business Media LLC 2019
- RnBeads 2.0: comprehensive analysis of DNA methylation data
Müller, Fabian; Scherer, Michael; Assenov, Yassen et al.
Genome Biology. Bd. 20. H. 1. Springer Science and Business Media LLC 2019
- Enrichment analysis with EpiAnnotator
Pageaud, Yoann; Plass, Christoph; Assenov, Yassen
Bioinformatics. Bd. 34. H. 10. Oxford University Press (OUP) 2018 S. 1781 - 1783
- Intratumor heterogeneity in epigenetic patterns
Assenov, Yassen; Brocks, David; Gerhäuser, Clarissa
Seminars in Cancer Biology. Bd. 51. Elsevier BV 2018 S. 12 - 21
- Maftools: efficient and comprehensive analysis of somatic variants in cancer
Mayakonda, Anand; Lin, De-Chen; Assenov, Yassen et al.
Genome Research. Bd. 28. H. 11. Cold Spring Harbor Laboratory 2018 S. 1747 - 1756
- Molecular Evolution of Early-Onset Prostate Cancer Identifies Molecular Risk Markers and Clinical Trajectories
Gerhauser, Clarissa; Favero, Francesco; Risch, Thomas et al.
Cancer Cell. Bd. 34. H. 6. Elsevier BV 2018 S. 996 - 1011.e8
- Circulating cytokines and small molecules follow distinct expression patterns in acute myeloid leukaemia
Islam, Mirazul; Mohamed, Elsa Haniffah; Esa, Ezalia et al.
British Journal of Cancer. Bd. 117. H. 10. Springer Science and Business Media LLC 2017 S. 1551 - 1556
- Differential Analysis of Genetic, Epigenetic, and Cytogenetic Abnormalities in AML
Islam, Mirazul; Mohamed, Zahurin; Assenov, Yassen
International Journal of Genomics. Bd. 2017. Wiley 2017 S. 1 - 13
- DNMT and HDAC inhibitors induce cryptic transcription start sites encoded in long terminal repeats
Brocks, David; Schmidt, Christopher R; Daskalakis, Michael et al.
Nature Genetics. Bd. 49. H. 7. Springer Science and Business Media LLC 2017 S. 1052 - 1060
- Genome-wide genetic and epigenetic analyses of pancreatic acinar cell carcinomas reveal aberrations in genome stability
Jäkel, Cornelia; Bergmann, Frank; Toth, Reka et al.
Nature Communications. Bd. 8. H. 1. Springer Science and Business Media LLC 2017
- Melanoma-Derived iPCCs Show Differential Tumorigenicity and Therapy Response
Bernhardt, Mathias; Novak, Daniel; Assenov, Yassen et al.
Stem Cell Reports. Bd. 8. H. 5. Elsevier BV 2017 S. 1379 - 1391
- RAS-pathway mutation patterns define epigenetic subclasses in juvenile myelomonocytic leukemia
Lipka, Daniel B.; Witte, Tania; Toth, Reka et al.
Nature Communications. Bd. 8. H. 1. Springer Science and Business Media LLC 2017
- Strategies for analyzing bisulfite sequencing data
Wreczycka, Katarzyna; Gosdschan, Alexander; Yusuf, Dilmurat et al.
Journal of Biotechnology. Bd. 261. Elsevier BV 2017 S. 105 - 115
- DNA methylation dynamics during B cell maturation underlie a continuum of disease phenotypes in chronic lymphocytic leukemia
Oakes, Christopher C; Seifert, Marc; Assenov, Yassen et al.
Nature Genetics. Bd. 48. H. 3. Springer Science and Business Media LLC 2016 S. 253 - 264
- Epigenetic profiling to classify cancer of unknown primary: a multicentre, retrospective analysis
Moran, Sebastian; Martínez-Cardús, Anna; Sayols, Sergi et al.
The Lancet Oncology. Bd. 17. H. 10. Elsevier BV 2016 S. 1386 - 1395
- Epigenetic regulation of diacylglycerol kinase alpha promotes radiation-induced fibrosis
Weigel, Christoph; Veldwijk, Marlon R.; Oakes, Christopher C. et al.
Nature Communications. Bd. 7. H. 1. Springer Science and Business Media LLC 2016
- Quantitative comparison of DNA methylation assays for biomarker development and clinical applications
Bock, Christoph; Halbritter, Florian; Carmona, Francisco J et al.
Nature Biotechnology. Bd. 34. H. 7. Springer Science and Business Media LLC 2016 S. 726 - 737
- Mutational dynamics between primary and relapse neuroblastomas
Schramm, Alexander; Köster, Johannes; Assenov, Yassen et al.
Nature Genetics. Bd. 47. H. 8. Springer Science and Business Media LLC 2015 S. 872 - 877
- Pediatric T-cell lymphoblastic leukemia evolves into relapse by clonal selection, acquisition of mutations and promoter hypomethylation
Kunz, Joachim B.; Rausch, Tobias; Bandapalli, Obul R. et al.
Haematologica. Bd. 100. H. 11. Ferrata Storti Foundation (Haematologica) 2015 S. 1442 - 1450
- Comprehensive analysis of DNA methylation data with RnBeads
Assenov, Yassen; Müller, Fabian; Lutsik, Pavlo et al.
Nature Methods. Bd. 11. H. 11. Springer Science and Business Media LLC 2014 S. 1138 - 1140
- Evolution of DNA Methylation Is Linked to Genetic Aberrations in Chronic Lymphocytic Leukemia
Oakes, Christopher C.; Claus, Rainer; Gu, Lei et al.
Cancer Discovery. Bd. 4. H. 3. American Association for Cancer Research (AACR) 2014 S. 348 - 361
- Identification and prioritization of genomic loci with disease-specific methylation
Assenov, Yassen
Saarländische Universitäts- und Landesbibliothek (Hrsg). Universität des Saarlandes. Saarbrücken. 2014 154 S.
- Intratumor DNA Methylation Heterogeneity Reflects Clonal Evolution in Aggressive Prostate Cancer
Brocks, David; Assenov, Yassen; Minner, Sarah et al.
Cell Reports. Bd. 8. H. 3. Elsevier BV 2014 S. 798 - 806
- A Prognostic DNA Methylation Signature for Stage I Non–Small-Cell Lung Cancer
Sandoval, Juan; Mendez-Gonzalez, Jesus; Nadal, Ernest et al.
Journal of Clinical Oncology. Bd. 31. H. 32. American Society of Clinical Oncology (ASCO) 2013 S. 4140 - 4147
- Analyzing Epigenome Data in Context of Genome Evolution and Human Diseases
Feuerbach, Lars; Halachev, Konstantin; Assenov, Yassen et al.
Methods in Molecular Biology. Humana Press 2012 S. 431 - 467
- Comparative genome-wide DNA methylation analysis of colorectal tumor and matched normal tissues
Simmer, Femke; Brinkman, Arie B.; Assenov, Yassen et al.
Epigenetics. Bd. 7. H. 12. Informa UK Limited 2012 S. 1355 - 1367
- Topological analysis and interactive visualization of biological networks and protein structures
Doncheva, Nadezhda T; Assenov, Yassen; Domingues, Francisco S et al.
Nature Protocols. Bd. 7. H. 4. Springer Science and Business Media LLC 2012 S. 670 - 685
- A DNA methylation fingerprint of 1628 human samples
Fernandez, Agustin F.; Assenov, Yassen; Martin-Subero, Jose Ignacio et al.
Genome Research. Bd. 22. H. 2. Cold Spring Harbor Laboratory 2011 S. 407 - 419
- A promoter DNA demethylation landscape of human hematopoietic differentiation
Calvanese, Vincenzo; Fernández, Agustín F.; Urdinguio, Rocío G. et al.
Nucleic Acids Research. Bd. 40. H. 1. Oxford University Press (OUP) 2011 S. 116 - 131
- A Network-based Analysis of Polyanion-binding Proteins Utilizing Human Protein Arrays
Salamat-Miller, Nazila; Fang, Jianwen; Seidel, Christopher W. et al.
Journal of Biological Chemistry. Bd. 282. H. 14. Elsevier BV 2007 S. 10153 - 10163
- Computational analysis of human protein interaction networks
Ramírez, Fidel; Schlicker, Andreas; Assenov, Yassen et al.
Proteomics. Bd. 7. H. 15. Wiley 2007 S. 2541 - 2552
- Computing topological parameters of biological networks
Assenov, Yassen; Ramírez, Fidel; Schelhorn, Sven-Eric et al.
Bioinformatics. Bd. 24. H. 2. Oxford University Press (OUP) 2007 S. 282 - 284
- The implications of alternative splicing in the ENCODE protein complement
Tress, Michael L.; Martelli, Pier Luigi; Frankish, Adam et al.
Proceedings of the National Academy of Sciences. Bd. 104. H. 13. Proceedings of the National Academy of Sciences 2007 S. 5495 - 5500
- A Network-based Analysis of Polyanion-binding Proteins Utilizing Yeast Protein Arrays
Salamat-Miller, Nazila; Fang, Jianwen; Seidel, Christopher W. et al.
Molecular & Cellular Proteomics. Bd. 5. H. 12. Elsevier BV 2006 S. 2263 - 2278
